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Research
External Link
The SKR Project was initiated at NLM in order to develop programs to provide usable semantic representation of biomedical free text by building on resources currently available at the library. The SKR project is concerned with reliable and effective management of the information encoded in natural language texts. The project develops programs that provide usable semantic representation of biomedical text by building on resources currently available at the Library, especially the UMLS knowledge sources and the natural language processing tools provided by the SPECIALIST system. This Java-based API to the Semantic Knowledge Representation (SKR) Scheduler facility was created to provide users with the ability to programmatically submit jobs to the Scheduler Batch and Interactive facilities instead of using the Web-based interface.
Tags api medical informatics terminologies tools & utilities
Updated
July 19 2024
Views
5,400

Molecular biology/Genetics
External Link
The Sequence Read Archive (SRA) stores sequencing data from the next generation of sequencing platforms including Roche 454 GS System®, Illumina Genome Analyzer®, Life Technologies AB SOLiD System®, Helicos Biosciences Heliscope®, Complete Genomics®, and Pacific Biosciences SMRT®.
Tags genetics genomics tools & utilities
Updated
July 19 2024
Views
173

Molecular biology/Genetics
External Link
This site is for browsing WGS (Whole Genome Shotgun) genomes, TSA (Transcriptome Shotgun Assemblies) and TLS (Targeted Locus Study) sets. WGS sequences are incomplete genomes that have been sequenced by a whole genome shotgun strategy. TSA sequences are transcript sequences that have been computationally assembled from primary RNA sequence data. TLS sequences are large-scale marker gene sequencing studies.
Please consult WGS Submission or TSA Submission pages for more details.
https://www.ncbi.nlm.nih.gov/genbank/wgs
https://www.ncbi.nlm.nih.gov/genbank/tsa
Tags genomics tools & utilities
Updated
July 19 2024
Views
351

Terminology
External Link
SNOMED CT is one of a suite of designated standards for use in U.S. Federal Government systems for the electronic exchange of clinical health information and is also a required standard in interoperability specifications of the U.S. Healthcare Information Technology Standards Panel.
Tags dataset health data standards terminologies
Updated
July 19 2024
Views
683

Molecular biology/Genetics
External Link
This genetic variation services interconvert and transform short genetic variants between HGVS expressions, VCF format, and the new SPDI (Sequence Position Deletion Insertion) format, based on alignment datasets used by ClinVar and dbSNP. NOTE: This service is still in beta testing mode
Tags api data specifications genetics genomics molecular biology and 1 more
Updated
July 19 2024
Views
262

Molecular biology/Genetics
External Link
Compute cDNA-to-Genomic sequence alignments.
Tags computational biology genomics software tools & utilities
Updated
July 19 2024
Views
6,702

Molecular biology/Genetics
External Link
Three dimensional structures provide a wealth of information on the biological function and the evolutionary history of macromolecules. They can be used to examine sequence-structure-function relationships, interactions, active sites, and more.
Tags computational biology dataset macromolecules protein tools & utilities
Updated
July 19 2024
Views
6,480

Literature
External Link
Information about abstracts with distinct, labeled sections (e.g., Introduction, Methods, Results, discussion) that appear in MEDLINE.
Tags dataset literature
Updated
July 19 2024
Views
6,344

Molecular biology/Genetics
External Link
The Taxonomy Database is a curated classification and nomenclature for all of the organisms in the public sequence databases. This currently represents about 10% of the described species of life on the planet.
Tags biology classification dataset
Updated
July 19 2024
Views
6,640

Molecular biology/Genetics
External Link
A database that contains sequences built from the existing primary sequence data in GenBank. The sequences and corresponding annotations are experimentally supported and have been published in a peer-reviewed scientific journal.
Tags computational biology dataset genomics
Updated
July 19 2024
Views
5,273