An overview of Annual MeSH Processing (AMP)) for MeSH/MEDLINE, including MeSH Update Reports

I-MAGIC is an interactive tool to demonstrate how the SNOMED CT to ICD-10-CM map (https://www.nlm.nih.gov/research/umls/mapping_projects/snomedct_to_icd10cm.html) can be used to generate ICD-10-CM codes from clinical problems coded in SNOMED CT. It simulates a problem list entry interface in which the user searches for problem terms which are mapped to SNOMED CT codes in the back end. The SNOMED CT codes are then used to derive ICD-10-CM codes using the Map.

The List of Serials Indexed for Online Users (LSIOU) provides bibliographic information for all journals whose articles were ever indexed over time with the MeSH® vocabulary and cited in MEDLINE®, the backbone of the NLM PubMed® database. It includes titles that ceased publication, changed titles, or are no longer indexed. More detailed bibliographic data and information about indexing coverage for serials cited in MEDLINE/PubMed can be found in LocatorPlus Catalog®, the NLM online catalog, and the NLM Catalog, an Entrez database.

MAGPIE is an interactive tool to help users (e.g., professional coders, researchers, clinicians) find SNOMED CT and ICD-10-PCS codes for medical procedures and interventions. MAGPIE is an NLM research tool (it has not been tested in a production environment), and is developed primarily for the 2018 version of ICD-10-PCS. MAGPIE combines lexical and map-assisted searching strategies to look for SNOMED CT, ICD-9-CM, and ICD-10-PCS codes sequentially.

MedGen is NCBI's portal to information about conditions and phenotypes related to Medical Genetics. Terms from the NIH Genetic Testing Registry (GTR), UMLS, HPO, Orphanet, ClinVar and other sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder. The concept identifier (CUI) is used to aggregate information about that concept, similar to the way NCBI Gene serves as a gateway to gene-related information.

MedGen provides links to such resources as: Genetic tests registered in the NIH Genetic Testing Registry (GTR), GeneReviews, ClinVar, OMIM, Related genes, Disorders with similar clinical features, Medical and research literature, Practice guidelines, Consumer resources, Ontologies such as HPO and ORDO.

Links to the GTR, GeneReviews, and Practice Guidelines are based on curation by NCBI staff. Other data feeds are automated, but reviewed by NCBI staff and informed by feedback from the community.

Medical Subject Headings (MeSH) is a hierarchically-organized terminology for indexing and cataloging of biomedical information. It is used for the indexing of PubMed and other NLM databases. Please see the Terms and Conditions for more information regarding the use and re-use of MeSH. NLM produces Medical Subject Headings XML, ASCII, MARC 21 and RDF formats.

Updates to the data files are made according to the following schedule:

MeSH XML
MeSH Descriptor files updated annually
MeSH Qualifier files updated annually
MeSH Supplemental Concept Records (SCR) updated daily (Monday - Friday)

MeSH ASCII
MeSH Descriptor files updated annually
MeSH Qualifier files updated annually
MeSH Supplemental Concept Records (SCR) updated daily (Monday - Friday)

MeSH MARC21
All files posted monthly

MeSH RDF
All files posted daily (Monday - Friday)

A system for producing indexing recommendations to assist in the indexing process at NLM. Currently provides indexing recommendations to more than 100 journals based on the NLM Medical Subject Headings (MeSH) vocabulary.

MTI is the main product of the Indexing Initiative project and has been providing indexing recommendations based on the Medical Subject Headings (MeSH®) vocabulary since 2002. In 2011, NLM expanded MTI's role by designating it as the first-line indexer (MTIFL) for a few journals; today the MTIFL workflow includes over 350 journals and continues to increase. The close collaboration of the NLM Index Section, Lister Hill National Center for Biomedical Communications, and Office of Computer & Communications Systems continues to expand and refine the ability of MTI to provide assistance to the indexers.

The MEDLINE/PubMed Baseline Repository (MBR) provides access to each MEDLINE/PubMed Baseline snapshot starting with the 2002 MEDLINE Baseline. Each baseline contains a snapshot of MEDLINE citations in the state they were at a given moment in time without the MeSH vocabulary updates and other revisions that occur during the year. The baseline snapshot is created at the beginning of each new MeSH Indexing Year. The records included in the MEDLINE/PubMed Baseline databases represent a static view of the data at the time each baseline database was created.

This dataset includes all newly added MeSH Main Headings for 2023. Headings play a central role in MeSH vocabulary as a unit of Indexing and retrieval. With the exception of Class 3 Descriptors, all descriptors are organized into a numbered tree structure or hierarchy that allows users to browse in a orderly fashion from broader to narrower topics. Scope Notes provide a concise summary describing the meaning and scope of the MeSH Descriptor.

Publication Types (Publication Characteristics) are Descriptors that indicate what an indexed item is, (i.e., its genre, rather than what it is about - for example, Historical Article). They may include Publication Components, such as Charts; Publication Formats, such as Editorial; and Study Characteristics, such as Clinical Trial.

They function as metadata, rather than being about the content. These records are searchable in PubMed as Publication Type [PT], and the terms in MEDLINE records are labeled as "PT" or rather than "MH" or . They are listed in category V of the MeSH Tree Structures.