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Drugs and Chemicals
External Link
RxNorm provides normalized names for clinical drugs and links its names to many of the drug vocabularies commonly used in pharmacy management and drug interaction software, including those of First Databank, Micromedex, Gold Standard, and Multum. By providing links between these vocabularies, RxNorm can mediate messages between systems not using the same software and vocabulary.
Tags api dataset drugs generic health data standards and 2 more
Updated
July 19 2024
Views
6,287

Terminology
External Link
RxTerms is a drug interface terminology derived from RxNorm for prescription writing or medication history recording (e.g. in e-prescribing systems, PHRs). RxTerms is derived only from the non-proprietary content of RxNorm, which is developed and maintained by the U.S. National Library of Medicine. No fee or license is required to use the RxTerms data. Technical documentation at https://wwwcf.nlm.nih.gov/umlslicense/rxtermApp/rxTermFileStructure.cfm
Tags api dataset drugs drug terminology health data standards and 1 more
Updated
July 19 2024
Views
6,157

Research
External Link
The SKR Project was initiated at NLM in order to develop programs to provide usable semantic representation of biomedical free text by building on resources currently available at the library. The SKR project is concerned with reliable and effective management of the information encoded in natural language texts. The project develops programs that provide usable semantic representation of biomedical text by building on resources currently available at the Library, especially the UMLS knowledge sources and the natural language processing tools provided by the SPECIALIST system. This Java-based API to the Semantic Knowledge Representation (SKR) Scheduler facility was created to provide users with the ability to programmatically submit jobs to the Scheduler Batch and Interactive facilities instead of using the Web-based interface.
Tags api medical informatics terminologies tools & utilities
Updated
July 19 2024
Views
4,900

Molecular biology/Genetics
External Link
The Sequence Read Archive (SRA) stores sequencing data from the next generation of sequencing platforms including Roche 454 GS System®, Illumina Genome Analyzer®, Life Technologies AB SOLiD System®, Helicos Biosciences Heliscope®, Complete Genomics®, and Pacific Biosciences SMRT®.
Tags genetics genomics tools & utilities
Updated
July 19 2024
Views
133

Molecular biology/Genetics
External Link
This site is for browsing WGS (Whole Genome Shotgun) genomes, TSA (Transcriptome Shotgun Assemblies) and TLS (Targeted Locus Study) sets. WGS sequences are incomplete genomes that have been sequenced by a whole genome shotgun strategy. TSA sequences are transcript sequences that have been computationally assembled from primary RNA sequence data. TLS sequences are large-scale marker gene sequencing studies.
Please consult WGS Submission or TSA Submission pages for more details.
https://www.ncbi.nlm.nih.gov/genbank/wgs
https://www.ncbi.nlm.nih.gov/genbank/tsa
Tags genomics tools & utilities
Updated
July 19 2024
Views
318

Terminology
External Link
SNOMED CT is one of a suite of designated standards for use in U.S. Federal Government systems for the electronic exchange of clinical health information and is also a required standard in interoperability specifications of the U.S. Healthcare Information Technology Standards Panel.
Tags dataset health data standards terminologies
Updated
July 19 2024
Views
382

Molecular biology/Genetics
External Link
A collection of Reference Sequence (RefSeq) proteins, from the complete genomes of prokaryotes, plasmids, and organelles, that have been grouped and annotated based on sequence similarity and protein function.
Tags dataset protein tools & utilities
Updated
July 19 2024
Views
5,617

Molecular biology/Genetics
External Link
Users can display, sort, subset and download position-specific score matrices (PSSMs) either from CDD records or from Position Specific Iterated (PSI)-BLAST protein searches.
Tags computational biology protein tools & utilities
Updated
July 19 2024
Views
800

Drugs and Chemicals
External Link
PubChem contains the chemical structures of small organic molecules and information on their biological activities. PubChem includes substance information, compound structures, and bioactivity data in three primary databases, PCSubstance, PCCompound, and PCBioAssay, respectively. PubChem is integrated with Entrez, NCBI's primary search engine, and also provides compound neighboring, sub/superstructure, similarity structure, bioactivity data, and other searching features. Technical documentation at http://pubchem.ncbi.nlm.nih.gov/help.html#faq
Tags api chemistry physical community health dataset organic chemicals
Updated
July 19 2024
Views
10,122

Molecular biology/Genetics
External Link
PUG provides access to PubChem services via a programmatic interface. Users may download data, initiate chemical structure searches, standardize chemical structures and interact with E-utilities. Access PUG with standard URLs or via SOAP. Technical documentation at http://pubchem.ncbi.nlm.nih.gov/pug/pughelp.html
Tags api biochemistry chemistry dataset
Updated
July 19 2024
Views
6,123