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Molecular biology/Genetics
External Link
The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The long term goal is to support convergence towards a standard set of gene annotations.
Available information includes: Announcements, Overview, Access and Availability, Collaborators, CCDS Identifiers and Tracking, Process Flow and Quality Testing, Publications.
Initial results from the Consensus CDS project are now available from the participants' genome browser Web sites. In addition, CCDS identifiers are indicated on the relevant NCBI RefSeq and Entrez Gene records. CCDS reports can be accessed by following provided links, or by directly querying the underlying database using the query interface provided at the top of the home page. The CCDS dataset is also available for anonymous FTP.
Tags dataset genetics genomics protein
Updated
July 19 2024
Views
11,110

Molecular biology/Genetics
External Link
CDD is a protein annotation resource that consists of a collection of well-annotated multiple sequence alignment models for ancient domains and full-length proteins.
Tags computational biology dataset protein
Updated
July 19 2024
Views
10,918

Molecular biology/Genetics
External Link
Identifies the conserved domains present in a protein sequence. CD-Search uses RPS-BLAST (Reverse Position-Specific BLAST) to compare a query sequence against position-specific score matrices that have been prepared from conserved domain alignments present in the Conserved Domain Database (CDD).
Tags computational biology tools & utilities
Updated
July 19 2024
Views
11,236

Molecular biology/Genetics
External Link
dbVar is NCBI's database of human genomic Structural Variation — large variants >50 bp including insertions, deletions, duplications, inversions, mobile elements, translocations, and complex variants.
Tags dataset genetics genomics tools & utilities
Updated
July 19 2024
Views
11,077

Molecular biology/Genetics
External Link
The database of Genotypes and Phenotypes (dbGaP) was developed to archive and distribute the data and results from studies that have investigated the interaction of genotype and phenotype in Humans.
Tags dataset genetics genomics software tools & utilities
Updated
July 19 2024
Views
10,937

Molecular biology/Genetics
External Link
dbSNP contains human single nucleotide variations, microsatellites, and small-scale insertions and deletions along with publication, population frequency, molecular consequence, and genomic and RefSeq mapping information for both common variations and clinical mutations. dbSNP tutorials can be found at https://github.com/ncbi/dbsnp/tree/master/tutorials
Tags api dataset genetics genomics tools & utilities
Updated
July 19 2024
Views
10,948

Drugs and Chemicals
External Link
Enables first responders and other healthcare providers and planners to plan for, respond to, recover from, and mitigate the effects of mass-casualty incidents involving accidental or terrorist chemical releases.
Tags chemical information disaster information hazardous substances
Updated
July 19 2024
Views
11,734

Drugs and Chemicals
External Link
ChemIDplus is no longer updated. These are the final files from February 22, 2023. All ChemIDplus data have been incorporated into PubChem.
ChemIDplus was a dictionary of over 400,000 chemicals (names, synonyms, and structures). ChemIDplus includes links to NLM and other databases and resources, including links to federal, state and international agencies. NLM makes a subset of ChemIDplus data available for download. The ChemIDplus Subset does not include the structure or the toxicity data available from the NLM web versions of the database. The ChemIDplus Subset is updated monthly.
Tags chemicals chemistry dataset
Updated
July 19 2024
Views
13,053

Literature
External Link
The Clinical Questions Collection is a repository of questions that have been collected between 1991 – 2003 from healthcare providers in clinical settings across the country. The questions have been submitted by investigators who wish to share their data with other researchers. This dataset is no-longer updated with new content. The collection is used in developing approaches to clinical and consumer-health question answering, as well as researching information needs of clinicians and the language they use to express their information needs. All files are formatted in XML.
Tags data distribution
Updated
July 19 2024
Views
12,866

Research
External Link
Clinical Table Search Service (formerly "lforms-service") is a web service which software programs can use for querying clinical data tables. The API for each table is designed to work with our form field autocompletion package, but can be used by other programs as well. The tables may also be accessed through FHIR APIs. The FAQ page (https://clinicaltables.nlm.nih.gov/faq.html) has further details on terms of service, etc
Tags api health data standards terminologies
Updated
July 19 2024
Views
10,893