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Molecular biology/Genetics
External Link
Database of Short Genetic Variations (dbSNP) contains human single nucleotide variations, microsatellites, and small-scale insertions and deletions along with publication, population frequency, molecular consequence, and genomic and RefSeq mapping information for both common variations and clinical mutations.
Tags api dataset genetics genomics tools & utilities
Updated
November 4 2024
Views
13,206

Molecular biology/Genetics
External Link
Database of Genotype and Phenotype (dbGaP) was developed to archive and distribute the data and results from studies that have investigated the interaction of genotype and phenotype in Humans.
Tags dataset genetics genomics software tools & utilities
Updated
November 4 2024
Views
12,902

Literature
External Link
Carcinogenic Potency Database (CPDB) is a single standardized resource of the results of 45 years of chronic, long-term carcinogenesis bioassays. The experiments vary widely in design, histopathological examination and nomenclature, and in the published authors’ choices of what information to publish in their papers.
Data are included from 6153 experiments reported in the general literature and in the in Technical Reports of the National Cancer Institute/National Toxicology Program (NCI/NTP). Information is given in the CPDB on strain, sex, route of compound administration, target organ, histopathology, author’s opinion about carcinogenicity, and reference to the published paper, as well as quantitative data on statistical significance, tumor incidence, dose-response curve shape, length of experiment, duration of dosing, and dose-rate.
The files on this Web site for the Excel format include (A) documentation of methods, field descriptions, and linking instructions; (B) Excel files; and (C) ancillary files of appendices. NOTE: This dataset is no-longer updated with new content.
Tags data distribution
Updated
November 4 2024
Views
17,658

Drugs and Chemicals
External Link
Hazardous Substances Data Bank (HSDB) was a toxicology database that focused on the toxicology of potentially hazardous chemicals. It provided information on human exposure, industrial hygiene, emergency handling procedures, environmental fate, regulatory requirements, nanomaterials, and related areas. The information in HSDB has been assessed by a Scientific Review Panel.
This version of HSDB data includes a subset of HSDB for downloading, but is no longer updated. HSDB data has been incorporated into PubChem.
Tags data distribution
Updated
November 4 2024
Views
14,458

Molecular biology/Genetics
External Link
NCBI Datasets is one-stop shop for finding, browsing, and downloading genomic data. Find and download taxonomy, genome, gene, transcript, protein data, including installation of NCBI Datasets command-line tools.
Tags dataset genes genomics protein
Updated
November 4 2024
Views
6,007

Molecular biology/Genetics
External Link
GENE-TOX provided genetic toxicology (mutagenicity) test data from expert peer review of open scientific literature for more than 3,000 chemicals from the United States Environmental Protection Agency (EPA) covering the years 1991 - 1998. GENE-TOX is no longer updated.
Tags data distribution
Updated
November 4 2024
Views
13,616

Molecular biology/Genetics
External Link
Genetic Testing Registry (GTR) is a free, centralized voluntary registry of comprehensive genetic test information covering clinical and research tests for Mendelian disorders and drug responses including multigenic, array-based, biochemical, cytogenetic, and molecular tests.
Tags genetics genomics tools & utilities
Updated
November 4 2024
Views
13,064

Molecular biology/Genetics
External Link
GEO (Gene Expression Omnibus) is a public functional genomics data repository supporting MIAME-compliant data submissions. There are also tools provided to help users query and download experiments and curated gene expression profiles.
Tags dataset genomics tools & utilities
Updated
November 4 2024
Views
13,916

Molecular biology/Genetics
External Link
GRAF (Genetic Relationship and Fingerprinting) is a C++ program that quickly finds the closely related subjects, infers subject ancestry, determines subject sexes using genotypes and compares the results derived from genotypes with those reported in the phenotype datasets
Tags computational biology genomics software tools & utilities
Updated
November 4 2024
Views
12,857

Molecular biology/Genetics
External Link
Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
Tags api dataset genes genomics phenotype and 1 more
Updated
November 4 2024
Views
13,227