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Genetic Relationship and Fingerprinting (GRAF) is a rapid statistical method to detect duplicates and closely related samples in large genomic datasets to be used as a quality assurance tool in dbGaP data processing. For more information, see this abstract in PubMed.
https://www.ncbi.nlm.nih.gov/pubmed/28609482
A tool to facilitate the analysis of immunoglobulin and T cell receptor variable domain sequences.
For more information, see this abstract in PubMed. https://www.ncbi.nlm.nih.gov/pubmed/23671333
GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. There are also tools provided to help users query and download experiments and curated gene expression profiles.
A JavaScript package that can be included in webpages or programs and used for validating and converting unit expressions from the Unified Code for Units of Measure (UCUM).
A utility for computing alignment of proteins to genomic nucleotide sequence based on a variation of the Needleman Wunsch global alignment algorithm and specifically accounts for introns and splice signals.
Sequence databases in FASTA format for use with the stand-alone BLAST programs. These databases must be formatted using formatdb before they can be used with BLAST.
A public domain quality assurance software package that facilitates the assessment of multiplex short tandem repeat (STR) DNA profiles based on laboratory-specific protocols.