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Terminology
External Link
The List of Serials Indexed for Online Users (LSIOU) provides bibliographic information for all journals whose articles were ever indexed over time with the MeSH® vocabulary and cited in MEDLINE®, the backbone of the NLM PubMed® database. It includes titles that ceased publication, changed titles, or are no longer indexed. More detailed bibliographic data and information about indexing coverage for serials cited in MEDLINE/PubMed can be found in LocatorPlus Catalog®, the NLM online catalog, and the NLM Catalog, an Entrez database.
Tags dataset library services literature
Created
August 26 2021
Views
11,038

Molecular biology/Genetics
External Link
The Taxonomy Database is a curated classification and nomenclature for all of the organisms in the public sequence databases. This currently represents about 10% of the described species of life on the planet.
Tags biology classification dataset
Created
August 26 2021
Views
6,135

Molecular biology/Genetics
External Link
Information about retroviruses and specialized tools for the analysis of retroviral proteins and genomes. The tools on this page aid in the identification, study and analysis of retroviral genomes and proteins. For instance, the HIV, human interaction database catalogs and organizes published data in peer-reviewed journals regarding HIV-1 and human protein interactions. Several links external to NCBI are also included for the purposes of education, research and health-related matters. These include links to the CDC, the Retroviruses textbook and other informative sites.
Tags dataset tools & utilities virus
Created
August 26 2021
Views
6,018

Molecular biology/Genetics
External Link
A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
Tags computational biology dataset genetics genomics
Created
August 26 2021
Views
147

Molecular biology/Genetics
External Link
The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. Protein sequences are the fundamental determinants of biological structure and function.
Tags api dataset protein
Created
August 26 2021
Views
1,711

Literature
External Link
The OLDMEDLINE subset in PubMed® represents journal article citations from two print indexes: Cumulated Index Medicus (CIM) and the Current List of Medical Literature (CLML). Created by the National Library of Medicine® (NLM®), there are approximately 2,011,000 article citations from international biomedical journals that cover the fields of medicine, preclinical sciences and allied health sciences from 1946 through 1965. OLDMEDLINE records, which are included in the MEDLINE® database, can be searched via PubMed.
The OLDMEDLINE subset in PubMed contains citations from the 1960 through 1965 Cumulated Index Medicus (CIM) print indexes and the 1946 through 1959 Current List of Medical Literature (CLML) print indexes. The OLDMEDLINE subset does not include citations from the Quarterly Cumulative Index Medicus (QCIM) print indexes. A hand search of the QCIM print indexes is necessary to ensure comprehensive review of medical periodical literature of the world from 1946 through 1956.
Tags dataset literature
Created
August 26 2021
Views
6,216

Other
External Link
Provides an overview of the C++ language with a focus on its use in accessing resources of the National Center for Biotechnology Information at the National Library of Medicine, National Institutes of Health.
Tags computational biology software
Created
August 26 2021
Views
6,871

Molecular biology/Genetics
External Link
TSA is an archive of computationally assembled transcript sequences from primary data such as ESTs and Next Generation Sequencing Technologies. The overlapping sequence reads from a complete transcriptome are assembled into transcripts by computational methods instead of by traditional cloning and sequencing of cloned cDNAs. The primary sequence data used in the assemblies must have been experimentally determined by the same submitter. TSA sequence records differ from GenBank records because there are no physical counterparts to the assemblies.
Tags dataset genomics tools & utilities
Created
August 26 2021
Views
1,003

Molecular biology/Genetics
External Link
This site is for browsing WGS (Whole Genome Shotgun) genomes, TSA (Transcriptome Shotgun Assemblies) and TLS (Targeted Locus Study) sets. WGS sequences are incomplete genomes that have been sequenced by a whole genome shotgun strategy. TSA sequences are transcript sequences that have been computationally assembled from primary RNA sequence data. TLS sequences are large-scale marker gene sequencing studies.
Please consult WGS Submission or TSA Submission pages for more details.
https://www.ncbi.nlm.nih.gov/genbank/wgs
https://www.ncbi.nlm.nih.gov/genbank/tsa
Tags genomics tools & utilities
Created
August 26 2021
Views
318

Molecular biology/Genetics
External Link
Whole Genome Shotgun (WGS) projects are genome assemblies of incomplete genomes or incomplete chromosomes of prokaryotes or eukaryotes that are generally being sequenced by a whole genome shotgun strategy. WGS projects may be annotated, but annotation is not required. NCBI has a Prokaryotic Genomes Annotation Pipeline that may be requested at the time the genome files are submitted to GenBank. This pipeline generates a submission-ready annotated file that is posted back to the submitter for review and which the submitter could edit prior to data release.
The public WGS projects are at the list of WGS projects. https://www.ncbi.nlm.nih.gov/Traces/wgs/
Tags computational biology dataset genomics
Created
August 26 2021
Views
13,663