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Molecular biology/Genetics
External Link
The BioProject database links to data that have been or will be deposited into archival databases maintained at members of the International Nucleotide Sequence Database Consortium (INSDC, which comprises the DNA DataBank of Japan (DDBJ), the European Nucleotide Archive at European Molecular Biology Laboratory (ENA), and GenBank at the National Center for Biotechnology Information (NCBI)).
Tags api computational biology dataset genomics
Updated
October 8 2024
Views
16,883

Molecular biology/Genetics
External Link
The BioSample database contains descriptions of biological source materials used in experimental assays.
Tags biological assay computational biology
Updated
October 8 2024
Views
15,223

Molecular biology/Genetics
External Link
BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences.
BLAST includes several specialized search interfaces: SmartBLAST, Primer-BLAST, Global Align, CD-Search, IgBLAST, VecScreen, CDART, Multiple Alignment, MOLE-BLAST, Searches at a Cloud Provider, BLAST+ Docker Image
Tags api biochemistry biotechnology computational biology dataset and 2 more
Updated
November 4 2024
Views
15,655

Molecular biology/Genetics
External Link
Identifies the conserved domains present in a protein sequence. CD-Search uses RPS-BLAST (Reverse Position-Specific BLAST) to compare a query sequence against position-specific score matrices that have been prepared from conserved domain alignments present in the Conserved Domain Database (CDD).
Tags computational biology tools & utilities
Updated
November 4 2024
Views
13,520

Molecular biology/Genetics
External Link
Conserved Domain Database (CDD) is a protein annotation resource that consists of a collection of well-annotated multiple sequence alignment models for ancient domains and full-length proteins.
Tags computational biology dataset protein
Updated
November 4 2024
Views
12,896

Molecular biology/Genetics
External Link
E-utilities (Entrez Programming Utilities) are a set of eight server-side programs that provide a stable interface into the Entrez query and database system at the National Center for Biotechnology Information (NCBI).
Tags api biomedicine computational biology tools & utilities
Updated
November 4 2024
Views
13,119

Molecular biology/Genetics
External Link
Sequence databases in FASTA format for use with the stand-alone BLAST programs. These databases must be formatted using formatdb before they can be used with BLAST.
Tags computational biology dataset
Updated
November 4 2024
Views
13,440

Molecular biology/Genetics
External Link
GRAF (Genetic Relationship and Fingerprinting) is a C++ program that quickly finds the closely related subjects, infers subject ancestry, determines subject sexes using genotypes and compares the results derived from genotypes with those reported in the phenotype datasets
Tags computational biology genomics software tools & utilities
Updated
November 4 2024
Views
12,858

Molecular biology/Genetics
External Link
IgBLAST was developed at NCBI to facilitate analysis of immunoglobulin as well as T cell receptor (TR) sequences. It uses BLAST search algorithm.
Tags computational biology genomics tools & utilities
Updated
November 5 2024
Views
11,555

Other
External Link
Provides an overview of the C++ language with a focus on its use in accessing resources of the National Center for Biotechnology Information at the National Library of Medicine, National Institutes of Health.
Tags computational biology software
Updated
July 19 2024
Views
6,873