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Molecular biology/Genetics
External Link
BLAST finds regions of similarity between biological sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance. Technical documentation at http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs
Tags api biochemistry biotechnology computational biology dataset and 2 more
Updated
December 7 2022
Views
4,040

Molecular biology/Genetics
External Link
The BioProject database provides an organizational framework to access information about research projects with links to data that have been or will be deposited into archival databases maintained at members of the International Nucleotide Sequence Database Consortium (INSDC, which comprises the DNA DataBank of Japan (DDBJ), the European Nucleotide Archive at European Molecular Biology Laboratory (ENA), and GenBank at the National Center for Biotechnology Information (NCBI)).
Tags api computational biology dataset genomics
Updated
September 30 2022
Views
4,107

Molecular biology/Genetics
External Link
The BioSample database contains descriptions of biological source materials used in experimental assays.
Tags biological assay computational biology
Updated
September 30 2022
Views
3,815

Molecular biology/Genetics
External Link
The NCBI BioSystems Database provides integrated access to biological systems and their component genes, proteins, and small molecules, as well as literature describing those biosystems and other related data throughout Entrez.
Tags api computational biology dataset
Updated
September 30 2022
Views
3,775

Molecular biology/Genetics
External Link
CDD is a protein annotation resource that consists of a collection of well-annotated multiple sequence alignment models for ancient domains and full-length proteins.
Tags computational biology dataset protein
Updated
September 30 2022
Views
2,659

Molecular biology/Genetics
External Link
Identifies the conserved domains present in a protein sequence. CD-Search uses RPS-BLAST (Reverse Position-Specific BLAST) to compare a query sequence against position-specific score matrices that have been prepared from conserved domain alignments present in the Conserved Domain Database (CDD).
Tags computational biology tools & utilities
Updated
September 30 2022
Views
2,638

Research
External Link
A tool that allows users to construct an E-utility analysis pipeline using an online form, and then generates a Perl script to execute the pipeline.
Tags computational biology molecular biology tools & utilities
Updated
September 30 2022
Views
2,799

Molecular biology/Genetics
External Link
The Entrez Programming Utilities (E-utilities) are a set of eight server-side programs that provide a stable interface into the Entrez query and database system at the National Center for Biotechnology Information (NCBI). The E-utilities use a fixed URL syntax that translates a standard set of input parameters into the values necessary for various NCBI software components to search for and retrieve the requested data. The E-utilities are therefore the structured interface to the Entrez system, which currently includes 38 databases covering a variety of biomedical data, including nucleotide and protein sequences, gene records, three-dimensional molecular structures, and the biomedical literature. Technical Documentation at http://www.ncbi.nlm.nih.gov/books/NBK25501/
Tags api biomedicine computational biology tools & utilities
Updated
September 30 2022
Views
2,654

Molecular biology/Genetics
External Link
Sequence databases in FASTA format for use with the stand-alone BLAST programs. These databases must be formatted using formatdb before they can be used with BLAST.
Tags computational biology dataset
Updated
September 30 2022
Views
2,625

Molecular biology/Genetics
External Link
Genetic Relationship and Fingerprinting (GRAF) is a rapid statistical method to detect duplicates and closely related samples in large genomic datasets to be used as a quality assurance tool in dbGaP data processing. For more information, see this abstract in PubMed.
https://www.ncbi.nlm.nih.gov/pubmed/28609482
Tags computational biology genomics software tools & utilities
Updated
September 30 2022
Views
2,651