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Molecular biology/Genetics
External Link
A repository of DNA sequence chromatograms (traces), base calls, and quality estimates for single-pass reads from various large-scale sequencing projects.
Tags dataset genomics
Updated
September 30 2022
Views
74

Molecular biology/Genetics
External Link
TSA is an archive of computationally assembled transcript sequences from primary data such as ESTs and Next Generation Sequencing Technologies. The overlapping sequence reads from a complete transcriptome are assembled into transcripts by computational methods instead of by traditional cloning and sequencing of cloned cDNAs. The primary sequence data used in the assemblies must have been experimentally determined by the same submitter. TSA sequence records differ from GenBank records because there are no physical counterparts to the assemblies.
Tags dataset genomics tools & utilities
Updated
September 30 2022
Views
76

Terminology
External Link
The UMLS integrates and distributes key terminology, classification and coding standards, and associated resources to promote creation of more effective and interoperable biomedical information systems and services, including electronic health records.
Tags api dataset health data standards terminologies
Updated
September 30 2022
Views
93

Molecular biology/Genetics
External Link
An automated analytical system for producing organized views of the transcriptome from a growing number of organisms. UniGene was retired in July 2019; however, you will continue to be able to access archived data.
Tags computational biology dataset genomics
Updated
September 30 2022
Views
821

Molecular biology/Genetics
External Link
UniVec and UniVec_Core databases in FASTA format.
Tags computational biology dataset
Updated
September 30 2022
Views
837

Terminology
External Link
The VSAC is a repository and authoring tool for public value sets created by external programs. Value sets are lists of codes and corresponding terms, from NLM-hosted standard clinical vocabularies (such as SNOMED CT®, RxNorm, LOINC® and others), that define clinical concepts to support effective and interoperable health information exchange. The VSAC does not create value set content. The VSAC also provides downloadable access to all official versions of value sets specified by the Centers for Medicare & Medicaid Services (CMS) electronic Clinical Quality Measures (eCQMs). For information on CMS eCQMs, visit the eCQI Resource Center. The VSAC is provided by the National Library of Medicine (NLM), in collaboration with the Office of the National Coordinator for Health Information Technology (ONC) and CMS.
Tags api clinical quality measures cqm dataset health data standards and 4 more
Updated
September 30 2022
Views
1,793

Molecular biology/Genetics
External Link
This resource provides viral genome sequence data and related information.
Tags dataset genomics virus
Updated
September 30 2022
Views
2,406

Molecular biology/Genetics
External Link
This tool helps identify the genotype of a viral sequence.
Tags dataset genomics tools & utilities virus
Updated
September 30 2022
Views
2,402

Images
External Link
The NLM Visible Human Project® has created publicly-available complete, anatomically detailed, three-dimensional representations of a human male body and a human female body. Specifically, the VHP provides a public-domain library of cross-sectional cryosection, CT, and MRI images obtained from one male cadaver and one female cadaver. The Visible Man data set was publicly released in 1994 and the Visible Woman in 1995.
Tags anatomy data distribution dataset images medical imaging
Updated
June 30 2023
Views
2,735

Molecular biology/Genetics
External Link
Whole Genome Shotgun (WGS) projects are genome assemblies of incomplete genomes or incomplete chromosomes of prokaryotes or eukaryotes that are generally being sequenced by a whole genome shotgun strategy. WGS projects may be annotated, but annotation is not required. NCBI has a Prokaryotic Genomes Annotation Pipeline that may be requested at the time the genome files are submitted to GenBank. This pipeline generates a submission-ready annotated file that is posted back to the submitter for review and which the submitter could edit prior to data release.
The public WGS projects are at the list of WGS projects. https://www.ncbi.nlm.nih.gov/Traces/wgs/
Tags computational biology dataset genomics
Updated
September 30 2022
Views
2,387