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Molecular biology/Genetics
External Link
Compute cDNA-to-Genomic sequence alignments.
Tags computational biology genomics software tools & utilities
Updated
September 30 2022
Views
62

Molecular biology/Genetics
External Link
A database that contains sequences built from the existing primary sequence data in GenBank. The sequences and corresponding annotations are experimentally supported and have been published in a peer-reviewed scientific journal.
Tags computational biology dataset genomics
Updated
September 30 2022
Views
28

Molecular biology/Genetics
External Link
A repository of DNA sequence chromatograms (traces), base calls, and quality estimates for single-pass reads from various large-scale sequencing projects.
Tags dataset genomics
Updated
September 30 2022
Views
48

Molecular biology/Genetics
External Link
TSA is an archive of computationally assembled transcript sequences from primary data such as ESTs and Next Generation Sequencing Technologies. The overlapping sequence reads from a complete transcriptome are assembled into transcripts by computational methods instead of by traditional cloning and sequencing of cloned cDNAs. The primary sequence data used in the assemblies must have been experimentally determined by the same submitter. TSA sequence records differ from GenBank records because there are no physical counterparts to the assemblies.
Tags dataset genomics tools & utilities
Updated
September 30 2022
Views
47

Molecular biology/Genetics
External Link
An automated analytical system for producing organized views of the transcriptome from a growing number of organisms. UniGene was retired in July 2019; however, you will continue to be able to access archived data.
Tags computational biology dataset genomics
Updated
September 30 2022
Views
28

Molecular biology/Genetics
External Link
Quickly identifying segments of a nucleic acid sequence that may be of vector origin.
Tags genomics tools & utilities
Updated
September 30 2022
Views
204

Molecular biology/Genetics
External Link
This resource provides viral genome sequence data and related information.
Tags dataset genomics virus
Updated
September 30 2022
Views
207

Molecular biology/Genetics
External Link
This tool helps identify the genotype of a viral sequence.
Tags dataset genomics tools & utilities virus
Updated
September 30 2022
Views
213

Molecular biology/Genetics
External Link
Extension of the Influenza Virus Resource to other organisms, providing an interface to download sequence sets of selected viruses; analysis tools, including virus-specific BLAST pages; and genome annotation pipelines (in progress).
Tags genomics tools & utilities virus
Updated
September 30 2022
Views
241

Molecular biology/Genetics
External Link
Whole Genome Shotgun (WGS) projects are genome assemblies of incomplete genomes or incomplete chromosomes of prokaryotes or eukaryotes that are generally being sequenced by a whole genome shotgun strategy. WGS projects may be annotated, but annotation is not required. NCBI has a Prokaryotic Genomes Annotation Pipeline that may be requested at the time the genome files are submitted to GenBank. This pipeline generates a submission-ready annotated file that is posted back to the submitter for review and which the submitter could edit prior to data release.
The public WGS projects are at the list of WGS projects. https://www.ncbi.nlm.nih.gov/Traces/wgs/
Tags computational biology dataset genomics
Updated
September 30 2022
Views
192