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Molecular biology/Genetics
External Link
Explore characteristics of amino acids by comparing their structural and chemical properties, predicting protein sequence changes caused by mutations, viewing common substitutions, and browsing functions of given residues in conserved domains.
Tags biochemistry protein tools & utilities
Updated
September 30 2022
Views
3,937

Molecular biology/Genetics
External Link
BLAST finds regions of similarity between biological sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance. Technical documentation at http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs
Tags api biochemistry biotechnology computational biology protein and 2 more
Updated
December 7 2022
Views
4,040

Molecular biology/Genetics
External Link
A stand-alone application for classifying protein sequences and investigating their evolutionary relationships. CDTree can import, analyze and update existing Conserved Domain (CDD) records and hierarchies, and also allows users to create their own.
Tags dataset protein tools & utilities
Updated
September 30 2022
Views
2,812

Molecular biology/Genetics
External Link
COBALT is a protein multiple sequence alignment tool that finds a collection of pairwise constraints derived from conserved domain database, protein motif database, and sequence similarity, using RPS-BLAST, BLASTP, and PHI-BLAST.
Tags protein tools & utilities
Updated
September 30 2022
Views
2,658

Molecular biology/Genetics
External Link
The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The long term goal is to support convergence towards a standard set of gene annotations.
Available information includes: Announcements, Overview, Access and Availability, Collaborators, CCDS Identifiers and Tracking, Process Flow and Quality Testing, Publications.
Initial results from the Consensus CDS project are now available from the participants' genome browser Web sites. In addition, CCDS identifiers are indicated on the relevant NCBI RefSeq and Entrez Gene records. CCDS reports can be accessed by following provided links, or by directly querying the underlying database using the query interface provided at the top of the home page. The CCDS dataset is also available for anonymous FTP.
Tags dataset genetics genomics protein
Updated
September 30 2022
Views
2,665

Molecular biology/Genetics
External Link
CDD is a protein annotation resource that consists of a collection of well-annotated multiple sequence alignment models for ancient domains and full-length proteins.
Tags computational biology dataset protein
Updated
September 30 2022
Views
2,659

Molecular biology/Genetics
External Link
The protein sequences corresponding to the translations of coding sequences (CDS) in GenBank collected for each GenBank release.
Tags dataset genomics protein
Updated
September 30 2022
Views
2,714

Molecular biology/Genetics
External Link
An interactive Web application that enables users to visualize multiple alignments created by database search results or other software applications. The MSA Viewer allows users to upload an alignment and set a master sequence and to explore the data using features such as zooming and changing of coloration.
Tags api protein tools & utilities
Updated
September 30 2022
Views
995

Molecular biology/Genetics
External Link
NCBI Datasets is a resource that lets you easily gather data from across NCBI databases. Find and download gene, transcript, protein and genome sequences, annotation and metadata.
Tags dataset genes genomics protein
Updated
September 30 2022
Views
973

Molecular biology/Genetics
External Link
A utility for computing alignment of proteins to genomic nucleotide sequence based on a variation of the Needleman Wunsch global alignment algorithm and specifically accounts for introns and splice signals.
Tags dataset protein tools & utilities
Updated
September 30 2022
Views
1,057