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Molecular biology/Genetics
External Link
BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences.
BLAST includes several specialized search interfaces: SmartBLAST, Primer-BLAST, Global Align, CD-Search, IgBLAST, VecScreen, CDART, Multiple Alignment, MOLE-BLAST, Searches at a Cloud Provider, BLAST+ Docker Image
Tags api biochemistry biotechnology computational biology protein and 2 more
Updated
November 4 2024
Views
15,651

Molecular biology/Genetics
External Link
CDTree is a stand-alone application for classifying protein sequences and investigating their evolutionary relationships. CDTree can import, analyze and update existing Conserved Domain (CDD) records and hierarchies, and also allows users to create their own.
Tags dataset protein tools & utilities
Updated
October 8 2024
Views
13,768

Molecular biology/Genetics
External Link
The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The long term goal is to support convergence towards a standard set of gene annotations.
Tags dataset genetics genomics protein
Updated
November 4 2024
Views
13,087

Molecular biology/Genetics
External Link
Conserved Domain Database (CDD) is a protein annotation resource that consists of a collection of well-annotated multiple sequence alignment models for ancient domains and full-length proteins.
Tags computational biology dataset protein
Updated
November 4 2024
Views
12,895

Molecular biology/Genetics
External Link
Constraint-Based Multiple Alignment Tool (COBALT) is a protein multiple sequence alignment tool that finds a collection of pairwise constraints derived from conserved domain database, protein motif database, and sequence similarity, using RPS-BLAST, BLASTP, and PHI-BLAST.
Tags protein tools & utilities
Updated
November 4 2024
Views
13,336

Molecular biology/Genetics
External Link
An interactive Web application that enables users to visualize multiple alignments created by database search results or other software applications. The MSA Viewer allows users to upload an alignment and set a master sequence and to explore the data using features such as zooming and changing of coloration.
Tags api protein tools & utilities
Updated
July 19 2024
Views
6,043

Molecular biology/Genetics
External Link
NCBI Datasets is one-stop shop for finding, browsing, and downloading genomic data. Find and download taxonomy, genome, gene, transcript, protein data, including installation of NCBI Datasets command-line tools.
Tags dataset genes genomics protein
Updated
November 4 2024
Views
6,007

Molecular biology/Genetics
External Link
NCBI Virus is an integrative, value-added resource designed to support retrieval, display and analysis of a curated collection of virus sequences and large sequence datasets. Its goal is to increase the usability of viral sequence data archived in GenBank and other NCBI repositories.
This resource includes resources previously included in HIV-1, Human Protein Interaction Database, Influenza Virus Resource, and Virus Variation.
Tags genomics protein sars-cov-2 virus
Updated
November 5 2024
Views
502

Molecular biology/Genetics
External Link
A utility for computing alignment of proteins to genomic nucleotide sequence based on a variation of the Needleman Wunsch global alignment algorithm and specifically accounts for introns and splice signals.
Tags dataset protein tools & utilities
Updated
July 19 2024
Views
6,614

Molecular biology/Genetics
External Link
The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. Protein sequences are the fundamental determinants of biological structure and function.
Tags api dataset protein
Updated
July 19 2024
Views
1,711