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Molecular biology/Genetics
External Link
BLAST (Basic Local Alignment Search Tool) finds regions of similarity between biological sequences.
BLAST includes several specialized search interfaces: SmartBLAST, Primer-BLAST, Global Align, CD-Search, IgBLAST, VecScreen, CDART, Multiple Alignment, MOLE-BLAST, Searches at a Cloud Provider, BLAST+ Docker Image
Tags api biochemistry biotechnology computational biology tools & utilities and 2 more
Updated
November 4 2024
Views
16,803

Molecular biology/Genetics
External Link
Identifies the conserved domains present in a protein sequence. CD-Search uses RPS-BLAST (Reverse Position-Specific BLAST) to compare a query sequence against position-specific score matrices that have been prepared from conserved domain alignments present in the Conserved Domain Database (CDD).
Tags computational biology tools & utilities
Updated
November 4 2024
Views
14,553

Molecular biology/Genetics
External Link
CDTree is a stand-alone application for classifying protein sequences and investigating their evolutionary relationships. CDTree can import, analyze and update existing Conserved Domain (CDD) records and hierarchies, and also allows users to create their own.
Tags dataset protein tools & utilities
Updated
October 8 2024
Views
14,805

Research
External Link
A stand-alone application for viewing 3-dimensional structures from NCBI Entrez retrieval service. Runs on Windows, Macintosh, and UNIX and can be configured to receive data from most popular Web browsers.
Tags molecular biology tools & utilities
Updated
November 4 2024
Views
15,295

Molecular biology/Genetics
External Link
Constraint-Based Multiple Alignment Tool (COBALT) is a protein multiple sequence alignment tool that finds a collection of pairwise constraints derived from conserved domain database, protein motif database, and sequence similarity, using RPS-BLAST, BLASTP, and PHI-BLAST.
Tags protein tools & utilities
Updated
November 4 2024
Views
14,351

Molecular biology/Genetics
External Link
Database of Genomic Structural Variation (dbVar) is NCBI's database of human genomic Structural Variation — large variants >50 bp including insertions, deletions, duplications, inversions, mobile elements, translocations, and complex variants.
Tags dataset genetics genomics tools & utilities
Updated
November 4 2024
Views
14,314

Molecular biology/Genetics
External Link
Database of Genotype and Phenotype (dbGaP) was developed to archive and distribute the data and results from studies that have investigated the interaction of genotype and phenotype in Humans.
Tags dataset genetics genomics software tools & utilities
Updated
November 4 2024
Views
13,942

Molecular biology/Genetics
External Link
Database of Short Genetic Variations (dbSNP) contains human single nucleotide variations, microsatellites, and small-scale insertions and deletions along with publication, population frequency, molecular consequence, and genomic and RefSeq mapping information for both common variations and clinical mutations.
Tags api dataset genetics genomics tools & utilities
Updated
November 4 2024
Views
14,270

Molecular biology/Genetics
External Link
E-utilities (Entrez Programming Utilities) are a set of eight server-side programs that provide a stable interface into the Entrez query and database system at the National Center for Biotechnology Information (NCBI).
Tags api biomedicine computational biology tools & utilities
Updated
November 4 2024
Views
14,143

Molecular biology/Genetics
External Link
Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
Tags api dataset genes genomics tools & utilities and 1 more
Updated
November 4 2024
Views
14,265