Explore characteristics of amino acids by comparing their structural and chemical properties, predicting protein sequence changes caused by mutations, viewing common substitutions, and browsing functions of given residues in conserved domains.
A stand-alone application for classifying protein sequences and investigating their evolutionary relationships. CDTree can import, analyze and update existing Conserved Domain (CDD) records and hierarchies, and also allows users to create their own.
A stand-alone application for viewing 3-dimensional structures from NCBI Entrez retrieval service. Runs on Windows, Macintosh, and UNIX and can be configured to receive data from most popular Web browsers.
COBALT is a protein multiple sequence alignment tool that finds a collection of pairwise constraints derived from conserved domain database, protein motif database, and sequence similarity, using RPS-BLAST, BLASTP, and PHI-BLAST.
Identifies the conserved domains present in a protein sequence. CD-Search uses RPS-BLAST (Reverse Position-Specific BLAST) to compare a query sequence against position-specific score matrices that have been prepared from conserved domain alignments present in the Conserved Domain Database (CDD).
Genetic Relationship and Fingerprinting (GRAF) is a rapid statistical method to detect duplicates and closely related samples in large genomic datasets to be used as a quality assurance tool in dbGaP data processing. For more information, see this abstract in PubMed.
I-MAGIC is an interactive tool to demonstrate how the SNOMED CT to ICD-10-CM map (https://www.nlm.nih.gov/research/umls/mapping_projects/snomedct_to_icd10cm.html) can be used to generate ICD-10-CM codes from clinical problems coded in SNOMED CT. It simulates a problem list entry interface in which the user searches for problem terms which are mapped to SNOMED CT codes in the back end. The SNOMED CT codes are then used to derive ICD-10-CM codes using the Map.