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Research
External Link
A tool that allows users to construct an E-utility analysis pipeline using an online form, and then generates a Perl script to execute the pipeline.
Tags computational biology molecular biology tools & utilities
Updated
September 30 2022
Views
2,553

Molecular biology/Genetics
External Link
The Entrez Programming Utilities (E-utilities) are a set of eight server-side programs that provide a stable interface into the Entrez query and database system at the National Center for Biotechnology Information (NCBI). The E-utilities use a fixed URL syntax that translates a standard set of input parameters into the values necessary for various NCBI software components to search for and retrieve the requested data. The E-utilities are therefore the structured interface to the Entrez system, which currently includes 38 databases covering a variety of biomedical data, including nucleotide and protein sequences, gene records, three-dimensional molecular structures, and the biomedical literature. Technical Documentation at http://www.ncbi.nlm.nih.gov/books/NBK25501/
Tags api biomedicine computational biology tools & utilities
Updated
September 30 2022
Views
2,408

Molecular biology/Genetics
External Link
Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
Tags api dataset genes genomics tools & utilities and 1 more
Updated
September 30 2022
Views
2,423

Molecular biology/Genetics
External Link
GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. There are also tools provided to help users query and download experiments and curated gene expression profiles.
Tags dataset genomics tools & utilities
Updated
September 30 2022
Views
2,654

Molecular biology/Genetics
External Link
Genetic Relationship and Fingerprinting (GRAF) is a rapid statistical method to detect duplicates and closely related samples in large genomic datasets to be used as a quality assurance tool in dbGaP data processing. For more information, see this abstract in PubMed.
https://www.ncbi.nlm.nih.gov/pubmed/28609482
Tags computational biology genomics software tools & utilities
Updated
September 30 2022
Views
2,404

Molecular biology/Genetics
External Link
A free, centralized voluntary registry of comprehensive genetic test information covering clinical and research tests for Mendelian disorders and drug responses including multigenic, array-based, biochemical, cytogenetic, and molecular tests.
Tags genetics genomics tools & utilities
Updated
September 30 2022
Views
2,395

Molecular biology/Genetics
External Link
This resource organizes NCBI information, resources, data, and tools and utilities on genomes including sequences, maps, chromosomes, assemblies, and annotations. Sequence and map data from the whole genomes of organisms. The genomes represent both completely sequenced organisms and those for which sequencing is in progress.
Tags dataset genomics reference tools & utilities
Updated
September 30 2022
Views
2,387

Molecular biology/Genetics
External Link
An integrated application for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence databases at NCBI, and mix these data with your own data.
Tags genomics software tools & utilities
Updated
September 30 2022
Views
2,473

Terminology
External Link
I-MAGIC is an interactive tool to demonstrate how the SNOMED CT to ICD-10-CM map (https://www.nlm.nih.gov/research/umls/mapping_projects/snomedct_to_icd10cm.html) can be used to generate ICD-10-CM codes from clinical problems coded in SNOMED CT. It simulates a problem list entry interface in which the user searches for problem terms which are mapped to SNOMED CT codes in the back end. The SNOMED CT codes are then used to derive ICD-10-CM codes using the Map.
Tags health data standards terminologies tools & utilities
Updated
September 30 2022
Views
2,303

Molecular biology/Genetics
External Link
A tool to facilitate the analysis of immunoglobulin and T cell receptor variable domain sequences.
For more information, see this abstract in PubMed. https://www.ncbi.nlm.nih.gov/pubmed/23671333
Tags computational biology genomics tools & utilities
Updated
September 30 2022
Views
2,389