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Molecular biology/Genetics
External Link
This site is for browsing WGS (Whole Genome Shotgun) genomes, TSA (Transcriptome Shotgun Assemblies) and TLS (Targeted Locus Study) sets. WGS sequences are incomplete genomes that have been sequenced by a whole genome shotgun strategy. TSA sequences are transcript sequences that have been computationally assembled from primary RNA sequence data. TLS sequences are large-scale marker gene sequencing studies.
Please consult WGS Submission or TSA Submission pages for more details.
https://www.ncbi.nlm.nih.gov/genbank/wgs
https://www.ncbi.nlm.nih.gov/genbank/tsa
Tags genomics tools & utilities
Updated
September 30 2022
Views
66

Molecular biology/Genetics
External Link
This genetic variation services interconvert and transform short genetic variants between HGVS expressions, VCF format, and the new SPDI (Sequence Position Deletion Insertion) format, based on alignment datasets used by ClinVar and dbSNP. NOTE: This service is still in beta testing mode
Tags api data specifications genetics genomics tools & utilities and 1 more
Updated
September 30 2022
Views
98

Molecular biology/Genetics
External Link
Compute cDNA-to-Genomic sequence alignments.
Tags computational biology genomics software tools & utilities
Updated
September 30 2022
Views
989

Molecular biology/Genetics
External Link
Three dimensional structures provide a wealth of information on the biological function and the evolutionary history of macromolecules. They can be used to examine sequence-structure-function relationships, interactions, active sites, and more.
Tags computational biology dataset macromolecules protein tools & utilities
Updated
September 30 2022
Views
952

Molecular biology/Genetics
External Link
TSA is an archive of computationally assembled transcript sequences from primary data such as ESTs and Next Generation Sequencing Technologies. The overlapping sequence reads from a complete transcriptome are assembled into transcripts by computational methods instead of by traditional cloning and sequencing of cloned cDNAs. The primary sequence data used in the assemblies must have been experimentally determined by the same submitter. TSA sequence records differ from GenBank records because there are no physical counterparts to the assemblies.
Tags dataset genomics tools & utilities
Updated
September 30 2022
Views
77

Other
External Link
A JavaScript package that can be included in webpages or programs and used for validating and converting unit expressions from the Unified Code for Units of Measure (UCUM).
Tags health data standards terminologies tools & utilities
Updated
September 30 2022
Views
968

Molecular biology/Genetics
External Link
Quickly identifying segments of a nucleic acid sequence that may be of vector origin.
Tags genomics tools & utilities
Updated
September 30 2022
Views
2,644

Molecular biology/Genetics
External Link
A computer algorithm that identifies similar protein 3-dimensional structures. Structure neighbors for every structure in MMDB are pre-computed and accessible via links on the MMDB Structure Summary pages.
Tags protein tools & utilities
Updated
September 30 2022
Views
2,642

Molecular biology/Genetics
External Link
This tool helps identify the genotype of a viral sequence.
Tags dataset genomics tools & utilities virus
Updated
September 30 2022
Views
2,649

Molecular biology/Genetics
External Link
Extension of the Influenza Virus Resource to other organisms, providing an interface to download sequence sets of selected viruses; analysis tools, including virus-specific BLAST pages; and genome annotation pipelines (in progress).
Tags genomics tools & utilities virus
Updated
September 30 2022
Views
2,679